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  "Title": "Statistical Inference for Mixed Traces of DNA (Lite-Version)",
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  "Date": "2023-03-15",
  "Authors@R": "person(\"Therese\", \"Graversen\", email = \"theg@itu.dk\",\nrole = c(\"aut\", \"cre\"))",
  "Description": "Statistical methods for DNA mixture analysis. This package\nis a lite-version of the 'DNAmixtures' package to allow users\nwithout a 'HUGIN' software license to experiment with the\nstatistical methodology. While the lite-version aims to provide\nthe full functionality it is noticeably less efficient than the\noriginal 'DNAmixtures' package. For details on implementation\nand methodology see\n<https://dnamixtures.r-forge.r-project.org/>.",
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    "removePeakInfo",
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    "setCPT",
    "setCPT.D",
    "setCPT.O",
    "setCPT.Q",
    "setPeakInfo",
    "varEst"
  ],
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      "title": "The MC15 DNA mixture",
      "object": "MC15",
      "file": "MC15.txt.gz",
      "class": [
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      ],
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        "height",
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        "K2",
        "K3"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "The MC18 DNA mixture",
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      ],
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        "K1",
        "K2",
        "K3"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "NGM",
      "title": "NGM allele frequencies",
      "object": "NGM",
      "file": "NGM.RData",
      "class": [
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      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "NGMDyes",
      "title": "Dyes used for NGM",
      "object": "NGMDyes",
      "file": "NGMDyes.RData",
      "class": [
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      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "ProfilerDyes",
      "title": "Dyes used for Profiler plus",
      "object": "ProfilerDyes",
      "file": "ProfilerDyes.RData",
      "class": [
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    },
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      "title": "Dyes used for SGMplus",
      "object": "SGMplusDyes",
      "file": "SGMplusDyes.RData",
      "class": [
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      ],
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      "table": false,
      "tojson": true
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      "title": "Allele frequencies for UK Caucasians",
      "object": "UKCaucasian",
      "file": "UKCaucasian.RData",
      "class": [
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      ],
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        "allele",
        "counts",
        "frequency"
      ],
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      "table": true,
      "tojson": true
    },
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      "name": "USCaucasian",
      "title": "The data base of allele frequencies for 302 US Caucasian profiles.",
      "object": "USCaucasian",
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      ],
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    }
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  "_help": [
    {
      "page": "DNAmixturesLite-package",
      "title": "Statistical Inference for Mixed Samples of DNA (Lite-Version)",
      "topics": [
        "DNAmixturesLite-package",
        "DNAmixtures",
        "DNAmixturesLite"
      ]
    },
    {
      "page": "boxplot.DNAmixture",
      "title": "Plot simulated peak heights for multiple DNA mixtures.",
      "topics": [
        "boxplot.DNAmixture"
      ]
    },
    {
      "page": "buildMixtureDomains",
      "title": "Create RHugin domains for computation.",
      "topics": [
        "buildMixtureDomains"
      ]
    },
    {
      "page": "DNAmixture",
      "title": "Create a DNA mixture model",
      "topics": [
        "DNAmixture",
        "print.DNAmixture"
      ]
    },
    {
      "page": "DNAmixtureData",
      "title": "Create a data set for a DNA mixture model",
      "topics": [
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      ]
    },
    {
      "page": "dyes",
      "title": "Dyes for a DNA mixture",
      "topics": [
        "dyes",
        "dyes<-"
      ]
    },
    {
      "page": "getShapes",
      "title": "Shape parameters for a mixture with known contributors only",
      "topics": [
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      ]
    },
    {
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      "title": "Loglikelihood function for DNA mixture analysis.",
      "topics": [
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        "logL.K",
        "logL.UK",
        "logLpres.K",
        "logLpres.UK"
      ]
    },
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      "title": "Maximum posterior genotypes of unknown contributors",
      "topics": [
        "map.genotypes"
      ]
    },
    {
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      "title": "The MC15 DNA mixture",
      "topics": [
        "MC15"
      ]
    },
    {
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      "title": "The MC18 DNA mixture",
      "topics": [
        "MC18"
      ]
    },
    {
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      "title": "Maximisation of the likelihood for one or more mixed traces of DNA",
      "topics": [
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      ]
    },
    {
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      "title": "Parameters for DNA mixture models",
      "topics": [
        "mixpar",
        "print.mixpar"
      ]
    },
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      "title": "NGM allele frequencies",
      "topics": [
        "NGM"
      ]
    },
    {
      "page": "NGMDyes",
      "title": "Dyes used for NGM",
      "topics": [
        "NGMDyes"
      ]
    },
    {
      "page": "plot.DNAmixture",
      "title": "Plot a DNA mixture model",
      "topics": [
        "plot.DNAmixture"
      ]
    },
    {
      "page": "predict.DNAmixture",
      "title": "Various probabilities in a fitted DNA mixture model",
      "topics": [
        "predict.DNAmixture"
      ]
    },
    {
      "page": "prequential.score",
      "title": "Calculate prequential scores",
      "topics": [
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        "prequential.score"
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    {
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      "title": "Dyes used for Profiler plus",
      "topics": [
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      ]
    },
    {
      "page": "qqpeak",
      "title": "Quantile-Quantile plot for assessing the distribution of observed peak heights.",
      "topics": [
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      ]
    },
    {
      "page": "rPeakHeight",
      "title": "Simulate peak heights from a DNA mixture model.",
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      "title": "Set conditional probability tables for all auxiliary variables",
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      "title": "Set tables for auxiliary variables 'O'.",
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      "title": "Allele frequencies for UK Caucasians",
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      "title": "The data base of allele frequencies for 302 US Caucasian profiles.",
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      "title": "Estimated asymptotic variance matrix for MLE",
      "topics": [
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        "varEst"
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